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  5. Smo170832

Smo170832


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170832
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AMTR_s00024p00178920 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AT1G09590 No alias Translation protein SH3-like family protein 0.09 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.12 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.06 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01001130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01033455001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Gb_09077 No alias component RPL21 of LSU proteome component 0.04 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.11 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.05 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.12 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.09 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.12 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.1 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.09 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.07 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.05 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.07 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 101
No external refs found!