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  5. Smo170948

Smo170948


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170948
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00197p00028970 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.07 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.12 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.03 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.03 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.03 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.05 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01011029001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.02 Archaeplastida
Gb_07070 No alias histone (H2A) 0.04 Archaeplastida
Gb_25326 No alias histone (H2A) 0.06 Archaeplastida
Gb_34906 No alias histone (H2A) 0.02 Archaeplastida
Gb_39944 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.02 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.07 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.02 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.02 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_7320190g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.02 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Pp3c10_13610V3.1 No alias gamma histone variant H2AX 0.04 Archaeplastida
Pp3c3_30120V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.02 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e005512_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 94 124
No external refs found!