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  5. Smo171051

Smo171051


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG0003455 (Archaeplastida) Phylogenetic Tree(s): OG0003455_tree ,
OG_05_0003421 (LandPlants) Phylogenetic Tree(s): OG_05_0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo171051
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.15 Archaeplastida
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.1 Archaeplastida
Cpa|evm.model.tig00001049.16 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 Archaeplastida
Cre02.g077300 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
GSVIVT01028887001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.12 Archaeplastida
Gb_33899 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.04 Archaeplastida
LOC_Os02g57590.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.08 Archaeplastida
LOC_Os05g08360.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.09 Archaeplastida
MA_124463g0010 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.08 Archaeplastida
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida
Pp3c27_4160V3.1 No alias fibrillarin 2 0.08 Archaeplastida
Pp3c5_11200V3.1 No alias fibrillarin 2 0.16 Archaeplastida
Solyc03g025270.3.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.2 Archaeplastida
Zm00001e023572_P001 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000692 Fibrillarin 60 285
No external refs found!