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  5. Smo171117

Smo171117


Description : Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter


Gene families : OG0000865 (Archaeplastida) Phylogenetic Tree(s): OG0000865_tree ,
OG_05_0001209 (LandPlants) Phylogenetic Tree(s): OG_05_0001209_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo171117
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00139590 evm_27.TU.AmTr_v1... ABC transporter A family member 12 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G47740 ATATH2, ATH2, ABCA3 ABC2 homolog 2 0.05 Archaeplastida
AT3G47750 ABCA4, ATATH3 ATP binding cassette subfamily A4 0.02 Archaeplastida
AT3G47770 ATH5, ATATH5, ABCA6 ABC2 homolog 5 0.03 Archaeplastida
AT3G47780 ATATH6, ATH6 ABC2 homolog 6 0.03 Archaeplastida
AT3G47790 ATH7, ATATH7 ABC2 homolog 7 0.02 Archaeplastida
AT5G61700 ATH16, ATATH16 ABC2 homolog 16 0.04 Archaeplastida
Cpa|evm.model.tig00000057.67 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Cre14.g618400 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Cre17.g721000 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
LOC_Os02g11960.1 No alias subfamily ABCA transporter 0.02 Archaeplastida
LOC_Os08g30770.1 No alias subfamily ABCA transporter 0.02 Archaeplastida
Pp3c12_20160V3.1 No alias ABC2 homolog 7 0.02 Archaeplastida
Solyc03g113040.4.1 No alias subfamily ABCA transporter 0.05 Archaeplastida
Solyc06g070920.3.1 No alias subfamily ABCA transporter 0.02 Archaeplastida
Solyc06g070950.2.1 No alias subfamily ABCA transporter 0.03 Archaeplastida
Zm00001e022343_P002 No alias subfamily ABCA transporter 0.03 Archaeplastida
Zm00001e022344_P001 No alias subfamily ABCA transporter 0.02 Archaeplastida
Zm00001e030619_P002 No alias subfamily ABCA transporter 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 645 789
No external refs found!