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  4. Sequence
  5. Smo172404

Smo172404


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS25 component


Gene families : OG0002355 (Archaeplastida) Phylogenetic Tree(s): OG0002355_tree ,
OG_05_0002220 (LandPlants) Phylogenetic Tree(s): OG_05_0002220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo172404
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00198170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AMTR_s00031p00169220 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AT2G21580 No alias Ribosomal protein S25 family protein 0.19 Archaeplastida
AT4G34555 No alias Ribosomal protein S25 family protein 0.13 Archaeplastida
AT4G39200 No alias Ribosomal protein S25 family protein 0.18 Archaeplastida
Cpa|evm.model.tig00000037.5 No alias 40S ribosomal protein S25-4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre08.g382500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01000974001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01010721001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01023806001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Gb_01693 No alias component RPS25 of SSU proteome 0.13 Archaeplastida
Gb_29693 No alias component RPS25 of SSU proteome 0.12 Archaeplastida
LOC_Os08g44480.1 No alias component RPS25 of SSU proteome 0.14 Archaeplastida
LOC_Os09g39540.1 No alias component RPS25 of SSU proteome 0.16 Archaeplastida
LOC_Os11g05562.1 No alias component RPS25 of SSU proteome 0.11 Archaeplastida
MA_104137g0010 No alias component RPS25 of SSU proteome 0.1 Archaeplastida
MA_10430279g0010 No alias component RPS25 of SSU proteome 0.13 Archaeplastida
Mp4g06120.1 No alias component RPS25 of SSU proteome 0.17 Archaeplastida
Pp3c14_13580V3.1 No alias Ribosomal protein S25 family protein 0.17 Archaeplastida
Pp3c17_4670V3.1 No alias Ribosomal protein S25 family protein 0.17 Archaeplastida
Pp3c1_25330V3.1 No alias Ribosomal protein S25 family protein 0.12 Archaeplastida
Pp3c2_14800V3.1 No alias Ribosomal protein S25 family protein 0.04 Archaeplastida
Solyc02g069850.3.1 No alias component RPS25 of SSU proteome 0.08 Archaeplastida
Zm00001e003921_P001 No alias component RPS25 of SSU proteome 0.09 Archaeplastida
Zm00001e019589_P001 No alias component RPS25 of SSU proteome 0.13 Archaeplastida
Zm00001e028930_P001 No alias component RPS25 of SSU proteome 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 6 105
No external refs found!