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  5. Smo183274

Smo183274


Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein


Gene families : OG0005568 (Archaeplastida) Phylogenetic Tree(s): OG0005568_tree ,
OG_05_0006382 (LandPlants) Phylogenetic Tree(s): OG_05_0006382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo183274
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00232880 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.06 Archaeplastida
Cpa|evm.model.tig00020830.55 No alias No description available 0.01 Archaeplastida
Cre13.g578650 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
GSVIVT01029443001 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
LOC_Os02g04510.1 No alias HCF173 protein involved in PS-II assembly 0.05 Archaeplastida
LOC_Os06g49120.1 No alias HCF173 protein involved in PS-II assembly 0.1 Archaeplastida
MA_21385g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_937923g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp3g04800.1 No alias HCF173 protein involved in PS-II assembly 0.06 Archaeplastida
Pp3c25_2890V3.1 No alias high chlorophyll fluorescence phenotype 173 0.09 Archaeplastida
Solyc08g016080.3.1 No alias HCF173 protein involved in PS-II assembly 0.07 Archaeplastida
Zm00001e013206_P002 No alias HCF173 protein involved in PS-II assembly 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003951 NAD+ kinase activity IEP Neighborhood
MF GO:0004089 carbonate dehydratase activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 445 512
No external refs found!