1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo185898

Smo185898


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo185898
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AMTR_s00019p00192190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.1 Archaeplastida
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.11 Archaeplastida
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.04 Archaeplastida
Cpa|evm.model.tig00001024.14 No alias No description available 0.01 Archaeplastida
Cre06.g278159 No alias Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01029107001 No alias Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.06 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os08g15050.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Pp3c2_31580V3.1 No alias CONSTANS-like 4 0.03 Archaeplastida
Pp3c7_25600V3.1 No alias CONSTANS-like 4 0.02 Archaeplastida
Solyc02g089540.3.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
No external refs found!