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  5. Smo19071

Smo19071


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL30 component


Gene families : OG0002142 (Archaeplastida) Phylogenetic Tree(s): OG0002142_tree ,
OG_05_0001948 (LandPlants) Phylogenetic Tree(s): OG_05_0001948_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo19071
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00066400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT1G77940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 Archaeplastida
AT3G18740 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.24 Archaeplastida
Cpa|evm.model.tig00001164.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Cre10.g420750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
GSVIVT01022191001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01032102001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Gb_02409 No alias component RPL30 of LSU proteome component 0.19 Archaeplastida
Gb_13527 No alias component RPL30 of LSU proteome component 0.06 Archaeplastida
LOC_Os01g16890.1 No alias component RPL30 of LSU proteome component 0.22 Archaeplastida
LOC_Os01g59730.1 No alias component RPL30 of LSU proteome component 0.07 Archaeplastida
LOC_Os05g41110.1 No alias component RPL30 of LSU proteome component 0.08 Archaeplastida
MA_10431626g0010 No alias component RPL30 of LSU proteome component 0.02 Archaeplastida
MA_6354g0010 No alias component RPL30 of LSU proteome component 0.18 Archaeplastida
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.25 Archaeplastida
Pp3c12_9290V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.21 Archaeplastida
Pp3c16_10400V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.23 Archaeplastida
Pp3c25_9320V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.09 Archaeplastida
Pp3c4_15480V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.28 Archaeplastida
Pp3c5_4330V3.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.25 Archaeplastida
Solyc01g009100.4.1 No alias component RPL30 of LSU proteome component 0.16 Archaeplastida
Solyc04g072660.4.1 No alias component RPL30 of LSU proteome component 0.15 Archaeplastida
Solyc11g071490.2.1 No alias component RPL30 of LSU proteome component 0.2 Archaeplastida
Zm00001e013242_P001 No alias component RPL30 of LSU proteome component 0.01 Archaeplastida
Zm00001e025492_P001 No alias component RPL30 of LSU proteome component 0.08 Archaeplastida
Zm00001e031987_P001 No alias component RPL30 of LSU proteome component 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 13 101
No external refs found!