Smo227409


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL12 component


Gene families : OG0002167 (Archaeplastida) Phylogenetic Tree(s): OG0002167_tree ,
OG_05_0002069 (LandPlants) Phylogenetic Tree(s): OG_05_0002069_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo227409
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00048810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00148p00026900 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AT2G37190 No alias Ribosomal protein L11 family protein 0.17 Archaeplastida
AT3G53430 No alias Ribosomal protein L11 family protein 0.06 Archaeplastida
AT5G60670 No alias Ribosomal protein L11 family protein 0.13 Archaeplastida
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
GSVIVT01016274001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
GSVIVT01025189001 No alias No description available 0.1 Archaeplastida
GSVIVT01025683001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
LOC_Os02g47140.1 No alias component RPL12 of LSU proteome component 0.07 Archaeplastida
LOC_Os04g50990.1 No alias component RPL12 of LSU proteome component 0.13 Archaeplastida
MA_10427147g0010 No alias component RPL12 of LSU proteome component 0.13 Archaeplastida
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.14 Archaeplastida
Pp3c15_14410V3.1 No alias Ribosomal protein L11 family protein 0.11 Archaeplastida
Pp3c16_2860V3.1 No alias Ribosomal protein L11 family protein 0.15 Archaeplastida
Pp3c27_660V3.1 No alias Ribosomal protein L11 family protein 0.11 Archaeplastida
Pp3c6_19290V3.1 No alias Ribosomal protein L11 family protein 0.12 Archaeplastida
Pp3c9_15380V3.1 No alias Ribosomal protein L11 family protein 0.12 Archaeplastida
Solyc06g075180.1.1 No alias component RPL12 of LSU proteome component 0.06 Archaeplastida
Solyc11g065670.1.1 No alias component RPL12 of LSU proteome component 0.11 Archaeplastida
Solyc11g069440.1.1 No alias component RPL12 of LSU proteome component 0.11 Archaeplastida
Zm00001e007067_P001 No alias component RPL12 of LSU proteome component 0.06 Archaeplastida
Zm00001e008316_P001 No alias component RPL12 of LSU proteome component 0.07 Archaeplastida
Zm00001e023297_P001 No alias component RPL12 of LSU proteome component 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 75 144
No external refs found!