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  5. Smo228166

Smo228166


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL29 component


Gene families : OG0004913 (Archaeplastida) Phylogenetic Tree(s): OG0004913_tree ,
OG_05_0004281 (LandPlants) Phylogenetic Tree(s): OG_05_0004281_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo228166
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00034600 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AMTR_s03807p00002720 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AT3G06680 No alias Ribosomal L29e protein family 0.05 Archaeplastida
Cre03.g207050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01035023001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_37735 No alias component RPL29 of LSU proteome component 0.05 Archaeplastida
LOC_Os01g19840.1 No alias component RPL29 of LSU proteome component 0.02 Archaeplastida
MA_10433318g0010 No alias component RPL29 of LSU proteome component 0.02 Archaeplastida
Mp1g23580.1 No alias component RPL29 of LSU proteome component 0.03 Archaeplastida
Pp3c10_8040V3.1 No alias Ribosomal L29e protein family 0.1 Archaeplastida
Pp3c14_7570V3.1 No alias Ribosomal L29e protein family 0.11 Archaeplastida
Pp3c1_34380V3.1 No alias Ribosomal L29e protein family 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002673 Ribosomal_L29e 3 42
No external refs found!