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  5. Smo228181

Smo228181


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-F component


Gene families : OG0001499 (Archaeplastida) Phylogenetic Tree(s): OG0001499_tree ,
OG_05_0005319 (LandPlants) Phylogenetic Tree(s): OG_05_0005319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo228181
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00226370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
AT2G43810 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
AT4G30220 RUXF small nuclear ribonucleoprotein F 0.07 Archaeplastida
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
GSVIVT01003994001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
LOC_Os02g08090.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
LOC_Os02g30624.2 No alias component LSm6 of U6-associated LSm accessory... 0.05 Archaeplastida
LOC_Os04g31950.1 No alias component LSm6 of U6-associated LSm accessory... 0.04 Archaeplastida
LOC_Os11g43620.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Pp3c12_17630V3.1 No alias small nuclear ribonucleoprotein F 0.03 Archaeplastida
Pp3c4_14270V3.1 No alias small nuclear ribonucleoprotein F 0.02 Archaeplastida
Solyc10g078450.2.1 No alias component LSm6 of U6-associated LSm accessory... 0.02 Archaeplastida
Zm00001e025108_P001 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 73
No external refs found!