Smo228648

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 5

Gene families : OG0003559 (Archaeplastida) Phylogenetic Tree(s): OG0003559_tree ,
OG_05_0003718 (LandPlants) Phylogenetic Tree(s): OG_05_0003718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo228648
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00034280	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
Pp3c10_21990V3.1	No alias	Eukaryotic rpb5 RNA polymerase subunit family protein	0.03	Archaeplastida
Zm00001e007759_P002	No alias	subunit 5 of RNA polymerase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004017	adenylate kinase activity	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Neighborhood
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Neighborhood
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005571	RNA_pol_Rpb5_N	6	90

External Links

No external refs found!