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  5. Smo228849

Smo228849


Description : RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease


Gene families : OG0005505 (Archaeplastida) Phylogenetic Tree(s): OG0005505_tree ,
OG_05_0005744 (LandPlants) Phylogenetic Tree(s): OG_05_0005744_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo228849
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00211760 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.04 Archaeplastida
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.04 Archaeplastida
Cpa|evm.model.tig00021181.14 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
Cre10.g435800 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
GSVIVT01031272001 No alias RNA processing.organelle machineries.ribonuclease... 0.04 Archaeplastida
Gb_26565 No alias endoribonuclease (CSP41) 0.08 Archaeplastida
LOC_Os12g23180.1 No alias endoribonuclease (CSP41) 0.04 Archaeplastida
MA_196108g0010 No alias endoribonuclease (CSP41) 0.04 Archaeplastida
MA_885264g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g11680.1 No alias endoribonuclease (CSP41) 0.03 Archaeplastida
Pp3c22_14530V3.1 No alias chloroplast RNA binding 0.02 Archaeplastida
Solyc06g073260.3.1 No alias endoribonuclease (CSP41) 0.02 Archaeplastida
Zm00001e029297_P001 No alias endoribonuclease (CSP41) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0050662 coenzyme binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 47 264
No external refs found!