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  5. AMTR_s00014p00175040

AMTR_s00014p00175040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00014.59

Description : Putative pectate lyase 2 OS=Arabidopsis thaliana


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0010441 (LandPlants) Phylogenetic Tree(s): OG_05_0010441_tree ,
OG_06_0010429 (SeedPlants) Phylogenetic Tree(s): OG_06_0010429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00014p00175040
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT1G11920 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_02248 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.04 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 1 39
No external refs found!