Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component
Gene families : OG0003300 (Archaeplastida) Phylogenetic Tree(s): OG0003300_tree ,
OG_05_0003792 (LandPlants) Phylogenetic Tree(s): OG_05_0003792_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Smo230895 | |
Cluster | HCCA: Cluster_39 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00019p00189060 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | Archaeplastida | |
AT2G18740 | No alias | Small nuclear ribonucleoprotein family protein | 0.08 | Archaeplastida | |
AT4G30330 | No alias | Small nuclear ribonucleoprotein family protein | 0.08 | Archaeplastida | |
Cre08.g385200 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | Archaeplastida | |
GSVIVT01008301001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.06 | Archaeplastida | |
LOC_Os08g05530.1 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.06 | Archaeplastida | |
MA_118124g0010 | No alias | component Sm-E of U1/U2/U4/U5-associated Sm accessory... | 0.07 | Archaeplastida | |
MA_7209g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Pp3c14_15210V3.1 | No alias | Small nuclear ribonucleoprotein family protein | 0.05 | Archaeplastida | |
Pp3c17_6070V3.1 | No alias | Small nuclear ribonucleoprotein family protein | 0.02 | Archaeplastida | |
Zm00001e016468_P001 | No alias | No annotation | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
MF | GO:0003713 | transcription coactivator activity | IEP | Neighborhood |
MF | GO:0003714 | transcription corepressor activity | IEP | Neighborhood |
MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005622 | intracellular | IEP | Neighborhood |
CC | GO:0005680 | anaphase-promoting complex | IEP | Neighborhood |
BP | GO:0006405 | RNA export from nucleus | IEP | Neighborhood |
BP | GO:0006406 | mRNA export from nucleus | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
BP | GO:0008104 | protein localization | IEP | Neighborhood |
BP | GO:0015031 | protein transport | IEP | Neighborhood |
BP | GO:0015833 | peptide transport | IEP | Neighborhood |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Neighborhood |
BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0042886 | amide transport | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
BP | GO:0050657 | nucleic acid transport | IEP | Neighborhood |
BP | GO:0050658 | RNA transport | IEP | Neighborhood |
BP | GO:0051028 | mRNA transport | IEP | Neighborhood |
BP | GO:0051168 | nuclear export | IEP | Neighborhood |
BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
BP | GO:0051236 | establishment of RNA localization | IEP | Neighborhood |
BP | GO:0051641 | cellular localization | IEP | Neighborhood |
BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
CC | GO:1990234 | transferase complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001163 | LSM_dom_euk/arc | 20 | 83 |
No external refs found! |