Smo230895


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component


Gene families : OG0003300 (Archaeplastida) Phylogenetic Tree(s): OG0003300_tree ,
OG_05_0003792 (LandPlants) Phylogenetic Tree(s): OG_05_0003792_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230895
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00189060 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.08 Archaeplastida
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.08 Archaeplastida
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
GSVIVT01008301001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 Archaeplastida
LOC_Os08g05530.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
MA_118124g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
MA_7209g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_15210V3.1 No alias Small nuclear ribonucleoprotein family protein 0.05 Archaeplastida
Pp3c17_6070V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Zm00001e016468_P001 No alias No annotation 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 20 83
No external refs found!