ECC Pair graph<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar"><span class="sr-only"> Toggle navigation</span><span class="icon-bar"></span><span class="icon-bar"></span><span class="icon-bar"></span></button><a class="navbar-brand hidden-xs" href="/"><img src="/static/img/icon-48x48.png" style="max-width:100px;margin-left:-7px;margin-top: -13px;float:left;margin-right:5px;" width="48px"></a><a class="navbar-brand visible-xs" href="/"><img src="/static/img/icon-32x32.png" style="max-width:100px; margin-top: -7px;" width="32px"></a></div><div id="navbar" class="navbar-collapse collapse"><ul class="nav navbar-nav navbar-left"><li><a href="/species/">Species</a></li><li><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Tools<span class="caret"></span></a><ul class="dropdown-menu"><li class="dropdown-header"> Expression 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navbar-nav navbar-right"><li><form class="navbar-form" role="search" method="post" id="search-form" name="search-form" action="/search/"><input id="csrf_token" name="csrf_token" type="hidden" value="ImM0YTJiYjRjYWVhY2JmODA3Njg3ZGEwNjU5YzBiNDMzOWM5NjJkZGYi.Gm-oRg.KXBc_ojePERe2R6n1rF-77RU0AY"><div class="form-group input-group"><input class="form-control" id="terms" name="terms" placeholder="Search" required type="text" value><div class="input-group-btn"><button type="submit" class="btn btn-primary" value="Search" data-toggle="modal" data-target="#loaderModal"><i class="fa fa-search"></i></button></div></div></form></li><li><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Help<span class="caret"></span></a><ul class="dropdown-menu"><li><a href="https://github.molgen.mpg.de/proost/CoNekT/blob/master/docs/tutorials/overview.md"> Tutorial<span class="text-muted"></span></a></li><li><a href="/contact"> Contact</a></li></li></ul></li><li class="dropdown"></li></ul></div></div></div><div class="container"></div><div class="container"><div class="top-pad"><div class="sidebar-sequence" id="sidebar"><p>Jump to ...</p><nav id="navbar-side"><ul class="nav nav-pills nav-stacked" data-spy="affix"><li><a href="#expression_profile">Profile</a></li><li><a href="#coexpression_networks">Networks</a></li><li><a href="#expression_conservation">ECC</a></li><li><a href="#annotation">Annotation</a></li><li><a href="#links">Links</a></li></ul></nav></div><ol class="breadcrumb"><li><a href="/">Home</a></li><li><a href="/species/">Species</a></li><li><a href="/species/view/10"><em>Selaginella moellendorffii</em></a></li><li>Sequence</li><li class="active"><strong>Smo231716</strong></li></ol><h1><strong>Smo231716</strong></h1><br><p><strong>Description :</strong> 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana</p><br><div><p><strong><abbr title="Click to show help" href="/help/gene_family" data-target="#helpModal">Gene families</abbr> :</strong><a href="/family/view/180"> OG0000179</a> (Archaeplastida) Phylogenetic Tree(s):<a href="/tree/view/40555"> OG0000179_tree</a> ,<br><a href="/family/view/132086">OG_05_0000459</a> (LandPlants) Phylogenetic Tree(s):<a href="/tree/view/80666"> OG_05_0000459_tree</a></p><p><strong>Sequence :</strong><a href="/sequence/modal/coding/328786" data-target="#profileModal">coding</a> (<a href="/sequence/fasta/coding/328786">download</a>),<a href="/sequence/modal/protein/328786" data-target="#profileModal"> protein</a> (<a href="/sequence/fasta/protein/328786">download</a>)</p></div><h3 class="banner-blue" id="expression_profile"> Expression Profile</h3><div class="pull-right"><a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a><a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a></div><div style="height:550px; max-height:550px; margin-top:30px"><canvas id="expression-profile" class="center-block" height="550"/></div><br><div class="pull-right"><a href="/profile/download/plot/341014" class="btn btn-primary" download="plot_341014.txt">Download</a></div><p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available<a href="/profile/view/341014"> here</a>.</p><br><div><h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3><div class="table-responsive"><table class="table table-striped table-separated" id="coexpression_table"><thead><tr><th data-sort="string-ins"><span class="sort-icon"></span>Type</th><th data-sort="string-ins"><span class="sort-icon"></span>Description</th><th>Actions</th></tr></thead><tbody><tr><td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td><td>HRR:<strong> Smo231716</strong></td><td><a href="/network/download/neighbors/332058" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_332058.txt"><i class="fa fa-list"></i></span><a href="/network/graph/332058" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a><span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span><span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td></tr><tr><td><abbr title="Click to show help" href="/help/cluster" data-target="#helpModal">Cluster</abbr></td><td>HCCA:<strong><a href="/cluster/view/6121" class="qtip_tooltip" qtip_href="/cluster/tooltip/6121"> Cluster_171</a></strong></td><td><a href="/cluster/view/6121" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a><a href="/cluster/graph/6121" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a><a href="/profile_comparison/cluster/6121" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a><a href="/heatmap/cluster/6121" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td></tr></tbody></table></div></div><br><h3 class="banner-blue" id="expression_conservation">Expression Context Conservation (<abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr>)</h3><div class="table-responsive"><table class="table table-striped table-separated" id="ecc_hits_table"><thead><tr><th data-sort="string-ins"><span class="sort-icon"></span>Target</th><th data-sort="string-ins"><span class="sort-icon"></span>Alias</th><th data-sort="string-ins"><span class="sort-icon"></span>Description</th><th data-sort="float"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr> score</th><th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th><th>Actions</th></tr></thead><tbody><tr><td><a href="/sequence/view/34202" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/34202">AMTR_s00019p00213640</a></td><td>evm_27.TU.AmTr_v1...</td><td>Secondary metabolism.phenolics.p-coumaroyl-CoA...</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2261394" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/41164" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/41164">AMTR_s00049p00100040</a></td><td>evm_27.TU.AmTr_v1...</td><td>4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2261636" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/41419" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/41419">AMTR_s00050p00171700</a></td><td>evm_27.TU.AmTr_v1...</td><td>4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2261668" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/4228" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/4228">AT1G51680</a></td><td>4CL1, AT4CL1, 4CL.1</td><td>4-coumarate:CoA ligase 1</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2261886" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/5259" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/5259">AT1G62940</a></td><td>ACOS5</td><td>acyl-CoA synthetase 5</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2261956" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/13694" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/13694">AT3G21240</a></td><td>AT4CL2, 4CL2</td><td>4-coumarate:CoA ligase 2</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2262070" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/286024" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/286024">LOC_Os01g67530.1</a></td><td><span class="text-muted">No alias</span></td><td>4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp....</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2262686" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/291233" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/291233">LOC_Os03g04000.1</a></td><td><span class="text-muted">No alias</span></td><td>OPC-8:CoA synthetase</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2262836" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/310478" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/310478">LOC_Os08g14760.1</a></td><td><span class="text-muted">No alias</span></td><td>p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2262976" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/311654" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/311654">LOC_Os08g34790.1</a></td><td><span class="text-muted">No alias</span></td><td>p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263024" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/226045" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/226045">MA_10432138g0010</a></td><td><span class="text-muted">No alias</span></td><td>4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana...</td><td>0.02</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263090" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/192488" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/192488">Pp3c18_6360V3.1</a></td><td><span class="text-muted">No alias</span></td><td>4-coumarate:CoA ligase 3</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263352" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/192792" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/192792">Pp3c19_13170V3.1</a></td><td><span class="text-muted">No alias</span></td><td>4-coumarate:CoA ligase 3</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263386" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/355427" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/355427">Solyc03g097030.3.1</a></td><td><span class="text-muted">No alias</span></td><td>p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)</td><td>0.02</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263599" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr><tr><td><a href="/sequence/view/137031" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/137031">Zm00001e016374_P001</a></td><td><span class="text-muted">No alias</span></td><td>acyl-CoA synthetase (ACS5)</td><td>0.03</td><td>Archaeplastida</td><td><a href="/ecc/graph_pair/2263601" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a><a href="/ecc/graph/328786/10/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td></tr></tbody></table></div><br><h3 class="banner-blue" id="annotation">Functional Annotation</h3><div class="panel with-nav-tabs panel-default"><div class="panel-heading"><ul class="nav nav-tabs"><li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li><li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li><li><a href="#tab3default" data-toggle="tab">InterPro</a></li></ul></div><div><div class="tab-content"><div class="tab-pane fade in active" id="tab1default"><div class="table-responsive"><table class="table table-striped table-fixed" id="go_table"><thead><tr><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th><th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th></tr></thead><tbody><tr class="parent_term" style="display: none" style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/2739" data-toggle="tooltip" data-placement="top" title=""A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt]">GO:0003674</a></td><td class="col-xs-6">molecular_function</td><td class="col-xs-1">None</td><td class="col-xs-2">Extended</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/2856" data-toggle="tooltip" data-placement="top" title=""Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732]">GO:0003824</a></td><td class="col-xs-6">catalytic activity</td><td class="col-xs-1">IEA</td><td class="col-xs-2">Interproscan</td></tr></tbody></table></div><div class="panel-body"><a href="#" id="go_toggle">Toggle parental</a></div></div><div class="tab-pane fade" id="tab2default"><div class="table-responsive"><table class="table table-striped table-fixed" id="predicted_go_table"><thead><tr><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th><th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th><th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th><th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th></tr></thead><tbody><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/2741" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with any nucleic acid." [GOC:jl]">GO:0003676</a></td><td class="col-xs-6">nucleic acid binding</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/2782" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with an RNA molecule or a portion thereof." [GOC:jl, GOC:mah]">GO:0003723</a></td><td class="col-xs-6">RNA binding</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/3545" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products." [EC:4.1.1.32]">GO:0004611</a></td><td class="col-xs-6">phosphoenolpyruvate carboxykinase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/5007" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription." [GOC:go_curators, GOC:txnOH]">GO:0006355</a></td><td class="col-xs-6">regulation of transcription, DNA-templated</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/6283" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate." [EC:2.8.2, GOC:curators]">GO:0008146</a></td><td class="col-xs-6">sulfotransferase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/7010" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + HCO3-." [EC:4.1.1.31]">GO:0008964</a></td><td class="col-xs-6">phosphoenolpyruvate carboxylase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/7881" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances." [GOC:go_curators]">GO:0009889</a></td><td class="col-xs-6">regulation of biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/8442" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form." [GOC:dph, GOC:tb]">GO:0010468</a></td><td class="col-xs-6">regulation of gene expression</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/8520" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb]">GO:0010556</a></td><td class="col-xs-6">regulation of macromolecule biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/10720" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a sulfur-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732]">GO:0016782</a></td><td class="col-xs-6">transferase activity, transferring sulfur-containing groups</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/10762" data-toggle="tooltip" data-placement="top" title=""Catalysis of the cleavage of C-C bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond." [GOC:jl]">GO:0016830</a></td><td class="col-xs-6">carbon-carbon lyase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">MF</td><td class="col-xs-2"><a href="/go/view/10763" data-toggle="tooltip" data-placement="top" title=""Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound." [http://www.mercksource.com/]">GO:0016831</a></td><td class="col-xs-6">carboxy-lyase activity</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/12185" data-toggle="tooltip" data-placement="top" title=""Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:go_curators]">GO:0019219</a></td><td class="col-xs-6">regulation of nucleobase-containing compound metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/12188" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators]">GO:0019222</a></td><td class="col-xs-6">regulation of metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/14845" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah]">GO:0031323</a></td><td class="col-xs-6">regulation of cellular metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/14848" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:mah]">GO:0031326</a></td><td class="col-xs-6">regulation of cellular biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/27523" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators]">GO:0050789</a></td><td class="col-xs-6">regulation of biological process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/27527" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators]">GO:0050794</a></td><td class="col-xs-6">regulation of cellular process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/27898" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds." [GOC:ai, GOC:tb]">GO:0051171</a></td><td class="col-xs-6">regulation of nitrogen compound metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/27972" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA." [GOC:ai]">GO:0051252</a></td><td class="col-xs-6">regulation of RNA metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/29979" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb]">GO:0060255</a></td><td class="col-xs-6">regulation of macromolecule metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/34884" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [PMID:19211694]">GO:0080090</a></td><td class="col-xs-6">regulation of primary metabolic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/42644" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription." [GO_REF:0000058, GOC:pr, GOC:TermGenie, GOC:txnOH, GOC:vw]">GO:1903506</a></td><td class="col-xs-6">regulation of nucleic acid-templated transcription</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/46113" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process." [GOC:obol]">GO:2000112</a></td><td class="col-xs-6">regulation of cellular macromolecule biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr><tr style="clear:both;"><td class="col-xs-1">BP</td><td class="col-xs-2"><a href="/go/view/47126" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of RNA biosynthetic process." [GOC:dph]">GO:2001141</a></td><td class="col-xs-6">regulation of RNA biosynthetic process</td><td class="col-xs-1">IEP</td><td class="col-xs-2">Neighborhood</td></tr></tbody></table></div></div><div class="tab-pane fade" id="tab3default"><div class="table-responsive"><table class="table table-striped table-fixed" id="interpro_table"><thead><tr><th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th><th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th><th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th><th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th></tr></thead><tbody><tr><td class="col-xs-3"><a href="/interpro/view/21508">IPR025110</a></td><td class="col-xs-5">AMP-bd_C</td><td class="col-xs-2">411</td><td class="col-xs-2">486</td></tr></tbody></table></div></div></div></div></div><div class="row"><div class="col-lg-12 col-md-12 col-sm-12"><div class="panel panel-default"><div class="panel-heading" id="links">External Links</div><div class="table-responsive"><table class="table table-striped table-separated"><tbody><tr><td><em>No external refs found!</em></td></td></tr></tbody></table></div></div></div></div><div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"></div></div></div></div></div></div><footer class="footer" id="footer"><div class="container"><div class="row"><div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div><div class="col-xs-2"><a href="/about" class="text-muted">About</a></div><div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div><div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div><div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div></div></div></footer><div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"></div></div></div><div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"><div class="modal-dialog" role="document" style="width:1000px;height:800px;"><div class="modal-content"><div class="modal-body"><div id="leafy_loader"></div><p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ...</p><p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style> Close</button></p></div></div></div></div><script src="/static/js/jquery.min.js"></script><script src="/static/js/bootstrap.min.js"></script><script src="/static/js/stupidtable.min.js"></script><script src="/static/js/TweenMax.min.js"></script><script src="/static/js/jquery.qtip.min.js"></script><script src="/static/js/planet_loader.js"></script><script>
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