Smo231918

Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase

Gene families : OG0001358 (Archaeplastida) Phylogenetic Tree(s): OG0001358_tree ,
OG_05_0001486 (LandPlants) Phylogenetic Tree(s): OG_05_0001486_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo231918
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01008352001	No alias	RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase	0.03	Archaeplastida
Gb_12958	No alias	poly(A) RNA polymerase	0.02	Archaeplastida
MA_27451g0010	No alias	poly(A) RNA polymerase	0.02	Archaeplastida
Mp7g10140.1	No alias	poly(A) RNA polymerase	0.03	Archaeplastida
Zm00001e005199_P002	No alias	poly(A) RNA polymerase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007010	PolA_pol_RNA-bd_dom	358	405

External Links

No external refs found!