Smo266974

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component

Gene families : OG0005231 (Archaeplastida) Phylogenetic Tree(s): OG0005231_tree ,
OG_05_0006383 (LandPlants) Phylogenetic Tree(s): OG_05_0006383_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo266974
Cluster	HCCA: Cluster_180

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.12	Archaeplastida
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	Archaeplastida
Cre13.g567850	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	Archaeplastida
GSVIVT01033401001	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.1	Archaeplastida
Gb_17575	No alias	core component Gar1 of H/ACA small nucleolar...	0.02	Archaeplastida
Gb_24533	No alias	core component Gar1 of H/ACA small nucleolar...	0.03	Archaeplastida
LOC_Os11g37080.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.05	Archaeplastida
Mp5g08210.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.03	Archaeplastida
Pp3c5_28430V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.09	Archaeplastida
Solyc10g078540.3.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
MF	GO:0070403	NAD+ binding	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	34	131

External Links

No external refs found!

Smo266974

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation