Smo267619

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS18 component

Gene families : OG0001796 (Archaeplastida) Phylogenetic Tree(s): OG0001796_tree ,
OG_05_0001726 (LandPlants) Phylogenetic Tree(s): OG_05_0001726_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo267619
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00178430	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
AT1G22780	RPS18A, PFL, PFL1	Ribosomal protein S13/S18 family	0.09	Archaeplastida
AT1G34030	No alias	Ribosomal protein S13/S18 family	0.08	Archaeplastida
AT4G09800	RPS18C	S18 ribosomal protein	0.07	Archaeplastida
Cre06.g272950	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
GSVIVT01017975001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
GSVIVT01034582001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
LOC_Os03g58050.1	No alias	component RPS18 of SSU proteome	0.16	Archaeplastida
LOC_Os07g07709.1	No alias	component RPS18 of SSU proteome	0.02	Archaeplastida
MA_10429265g0010	No alias	component RPS18 of SSU proteome	0.15	Archaeplastida
MA_10431843g0010	No alias	component RPS18 of SSU proteome	0.08	Archaeplastida
Mp1g07420.1	No alias	component RPS18 of SSU proteome	0.16	Archaeplastida
Mp5g02820.1	No alias	component RPS18 of SSU proteome	0.2	Archaeplastida
Pp3c16_2090V3.1	No alias	Ribosomal protein S13/S18 family	0.14	Archaeplastida
Pp3c25_1240V3.1	No alias	Ribosomal protein S13/S18 family	0.08	Archaeplastida
Pp3c25_1430V3.1	No alias	Ribosomal protein S13/S18 family	0.12	Archaeplastida
Pp3c5_2800V3.1	No alias	Ribosomal protein S13/S18 family	0.05	Archaeplastida
Pp3c6_21770V3.1	No alias	Ribosomal protein S13/S18 family	0.11	Archaeplastida
Pp3c6_21830V3.1	No alias	Ribosomal protein S13/S18 family	0.02	Archaeplastida
Solyc03g078290.3.1	No alias	component RPS18 of SSU proteome	0.16	Archaeplastida
Solyc06g073370.4.1	No alias	component RPS18 of SSU proteome	0.14	Archaeplastida
Solyc11g005680.2.1	No alias	component RPS18 of SSU proteome	0.08	Archaeplastida
Zm00001e005967_P001	No alias	component RPS18 of SSU proteome	0.19	Archaeplastida
Zm00001e011880_P001	No alias	component RPS18 of SSU proteome	0.2	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003713	transcription coactivator activity	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007018	microtubule-based movement	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	146

External Links

No external refs found!

Smo267619

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation