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  5. Smo270414

Smo270414


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS3 component


Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo270414
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AT2G31610 No alias Ribosomal protein S3 family protein 0.03 Archaeplastida
AT3G53870 No alias Ribosomal protein S3 family protein 0.05 Archaeplastida
AT5G35530 No alias Ribosomal protein S3 family protein 0.17 Archaeplastida
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
GSVIVT01015110001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
GSVIVT01035451001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_26536 No alias component RPS3 of SSU proteome 0.07 Archaeplastida
LOC_Os03g38000.1 No alias component RPS3 of SSU proteome 0.12 Archaeplastida
LOC_Os07g41750.1 No alias component RPS3 of SSU proteome 0.08 Archaeplastida
MA_10436283g0010 No alias component RPS3 of SSU proteome 0.11 Archaeplastida
MA_120861g0010 No alias component RPS3 of SSU proteome 0.09 Archaeplastida
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.14 Archaeplastida
Pp3c11_22640V3.1 No alias Ribosomal protein S3 family protein 0.14 Archaeplastida
Pp3c15_21360V3.1 No alias Ribosomal protein S3 family protein 0.1 Archaeplastida
Pp3c16_3760V3.1 No alias Ribosomal protein S3 family protein 0.06 Archaeplastida
Pp3c5_5330V3.1 No alias Ribosomal protein S3 family protein 0.08 Archaeplastida
Pp3c7_2620V3.1 No alias Ribosomal protein S3 family protein 0.13 Archaeplastida
Pp3c9_12170V3.1 No alias Ribosomal protein S3 family protein 0.14 Archaeplastida
Solyc07g041310.3.1 No alias component RPS3 of SSU proteome 0.14 Archaeplastida
Solyc08g061843.1.1 No alias component RPS3 of SSU proteome 0.14 Archaeplastida
Zm00001e021687_P001 No alias component RPS3 of SSU proteome 0.13 Archaeplastida
Zm00001e035528_P001 No alias component RPS3 of SSU proteome 0.02 Archaeplastida
Zm00001e040177_P002 No alias component RPS3 of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
No external refs found!