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  5. AMTR_s00015p00038940

AMTR_s00015p00038940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00015.12

Description : Cell wall.lignin.monolignol synthesis.cinnamyl-alcohol dehydrogenase


Gene families : OG0000219 (Archaeplastida) Phylogenetic Tree(s): OG0000219_tree ,
OG_05_0006034 (LandPlants) Phylogenetic Tree(s): OG_05_0006034_tree ,
OG_06_0005254 (SeedPlants) Phylogenetic Tree(s): OG_06_0005254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00038940
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT1G72680 CAD1, ATCAD1 cinnamyl-alcohol dehydrogenase 0.04 Archaeplastida
AT4G34230 CAD5, ATCAD5, CAD-5 cinnamyl alcohol dehydrogenase 5 0.03 Archaeplastida
GSVIVT01002106001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.06 Archaeplastida
GSVIVT01003153001 No alias Cell wall.lignin.monolignol synthesis.cinnamyl-alcohol... 0.03 Archaeplastida
GSVIVT01003944001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.01 Archaeplastida
GSVIVT01006459001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
GSVIVT01009972001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
GSVIVT01013448001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.06 Archaeplastida
GSVIVT01026631001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
LOC_Os02g09490.1 No alias cinnamyl-alcohol dehydrogenase 0.04 Archaeplastida
LOC_Os03g12270.1 No alias Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... 0.02 Archaeplastida
LOC_Os09g23530.1 No alias Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza... 0.02 Archaeplastida
LOC_Os09g23550.1 No alias Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza... 0.04 Archaeplastida
LOC_Os09g23560.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
LOC_Os10g29470.1 No alias Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... 0.04 Archaeplastida
LOC_Os11g40690.1 No alias Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... 0.04 Archaeplastida
MA_10427985g0020 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.01 Archaeplastida
MA_18380g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
MA_423264g0010 No alias cinnamyl-alcohol dehydrogenase 0.04 Archaeplastida
Mp5g14650.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida
Mp5g14660.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
Mp5g14670.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
Mp5g14710.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida
Solyc01g107590.3.1 No alias cinnamyl-alcohol dehydrogenase 0.03 Archaeplastida
Solyc02g069250.4.1 No alias Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... 0.02 Archaeplastida
Solyc08g014360.2.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.05 Archaeplastida
Solyc11g010960.2.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 Archaeplastida
Solyc11g010990.3.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.05 Archaeplastida
Solyc11g011330.2.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida
Solyc11g011340.2.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.05 Archaeplastida
Zm00001e013914_P002 No alias cinnamyl-alcohol dehydrogenase 0.04 Archaeplastida
Zm00001e034067_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034069_P001 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR013149 ADH_C 191 314
IPR013154 ADH_N 34 149
No external refs found!