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  5. Smo271913

Smo271913


Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP2S small sigma subunit


Gene families : OG0000560 (Archaeplastida) Phylogenetic Tree(s): OG0000560_tree ,
OG_05_0005986 (LandPlants) Phylogenetic Tree(s): OG_05_0005986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo271913
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AT2G17380 AP19 associated protein 19 0.02 Archaeplastida
Cre07.g324600 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 Archaeplastida
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
LOC_Os03g57040.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.02 Archaeplastida
MA_23830g0010 No alias AP-4 complex subunit sigma OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c12_2376V3.1 No alias Clathrin adaptor complex small chain family protein 0.03 Archaeplastida
Solyc04g081410.3.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.02 Archaeplastida
Solyc05g026130.3.1 No alias small subunit sigma of AP-4 vacuole cargo adaptor complex 0.05 Archaeplastida
Zm00001e005895_P003 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 141
No external refs found!