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Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo30095 | |
| Cluster | HCCA: Cluster_106 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00141780 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
| AMTR_s00045p00048330 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g53360,... | 0.03 | Archaeplastida | |
| AMTR_s00056p00185560 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
| AMTR_s00092p00078040 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.02 | Archaeplastida | |
| AT1G59720 | CRR28 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
| AT5G39350 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
| AT5G52630 | MEF1 | mitochondrial RNAediting factor 1 | 0.02 | Archaeplastida | |
| LOC_Os03g58100.1 | No alias | RNA editing factor (OTP85) | 0.02 | Archaeplastida | |
| LOC_Os05g24150.1 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Archaeplastida | |
| MA_20168g0010 | No alias | Pentatricopeptide repeat-containing protein At3g26782,... | 0.02 | Archaeplastida | |
| Pp3c17_5040V3.1 | No alias | mitochondrial editing factor 22 | 0.02 | Archaeplastida | |
| Pp3c6_23550V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| Solyc01g007850.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
| Solyc03g098420.3.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| Solyc05g006800.2.1 | No alias | Pentatricopeptide repeat-containing protein At1g59720,... | 0.03 | Archaeplastida | |
| Solyc07g006990.3.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| Solyc07g009220.2.1 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Archaeplastida | |
| Solyc11g011860.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g14330... | 0.02 | Archaeplastida | |
| Solyc11g066920.1.1 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | Archaeplastida | |
| Zm00001e003605_P001 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Archaeplastida | |
| Zm00001e007042_P001 | No alias | RNA editing factor (AEF1) | 0.02 | Archaeplastida | |
| Zm00001e011467_P004 | No alias | Pentatricopeptide repeat-containing protein At5g03800... | 0.03 | Archaeplastida | |
| Zm00001e021457_P001 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
| Zm00001e029186_P001 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.02 | Archaeplastida | |
| Zm00001e032499_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Neighborhood |
| MF | GO:0001871 | pattern binding | IEP | Neighborhood |
| BP | GO:0016042 | lipid catabolic process | IEP | Neighborhood |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Neighborhood |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
| MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Neighborhood |
| MF | GO:2001070 | starch binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 6 | 31 |
| No external refs found! |