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  5. Smo34484

Smo34484


Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0104094 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo34484
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00192220 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40720... 0.02 Archaeplastida
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
LOC_Os06g15670.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c17_23250V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Smo90480 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.05 Archaeplastida
Zm00001e012838_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 46 72
No external refs found!