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  5. Smo34638

Smo34638


Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0013527 (LandPlants) Phylogenetic Tree(s): OG_05_0013527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo34638
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00065p00033910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49740... 0.03 Archaeplastida
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
AMTR_s00173p00057570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os03g08680.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
LOC_Os06g27790.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_99220g0010 No alias Pentatricopeptide repeat-containing protein At5g55740,... 0.02 Archaeplastida
Pp3c11_7720V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Zm00001e013531_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 163
No external refs found!