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  4. Sequence
  5. Smo402301

Smo402301


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0104275 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo402301
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00241810 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00022p00228970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00065p00184910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00079p00137860 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AT1G18400 BEE1 BR enhanced expression 1 0.03 Archaeplastida
AT1G25330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT1G59640 BPEp, ZCW32, BPE, BPEub BIG PETAL P 0.02 Archaeplastida
AT1G73830 BEE3 BR enhanced expression 3 0.05 Archaeplastida
AT3G07340 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT4G34530 CIB1 cryptochrome-interacting basic-helix-loop-helix 1 0.03 Archaeplastida
AT5G58010 LRL3 LJRHL1-like 3 0.02 Archaeplastida
GSVIVT01004930001 No alias External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
GSVIVT01008628001 No alias External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
GSVIVT01010126001 No alias External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
GSVIVT01021032001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01023783001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
Gb_36369 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 Archaeplastida
LOC_Os06g08500.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os08g39630.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os09g31300.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_10435000g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_120179g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_14417g0020 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_158362g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_182616g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
MA_90272g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Mp1g19210.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mpzg01410.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c17_17000V3.1 No alias LJRHL1-like 1 0.05 Archaeplastida
Pp3c1_33270V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c21_14114V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Smo425336 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g109700.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Solyc02g062690.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 Archaeplastida
Solyc03g034000.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc03g119390.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Solyc04g007300.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc04g077480.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc05g006650.3.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc09g098110.4.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g098620.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc12g100140.3.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e003701_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e009823_P002 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e010016_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e011084_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e012110_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e018857_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e021418_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e022005_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e034446_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 Archaeplastida
Zm00001e034605_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Zm00001e035219_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e036318_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 569 614
No external refs found!