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  5. AMTR_s00016p00088520

AMTR_s00016p00088520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.50

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein


Gene families : OG0004385 (Archaeplastida) Phylogenetic Tree(s): OG0004385_tree ,
OG_05_0004567 (LandPlants) Phylogenetic Tree(s): OG_05_0004567_tree ,
OG_06_0004117 (SeedPlants) Phylogenetic Tree(s): OG_06_0004117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00088520
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018633001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01028843001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
LOC_Os10g38910.1 No alias PAM68 protein involved in PS-II assembly 0.03 Archaeplastida
MA_268175g0010 No alias PAM68 protein involved in PS-II assembly 0.03 Archaeplastida
Pp3c21_19650V3.1 No alias Protein of unknown function (DUF3464) 0.03 Archaeplastida
Solyc03g007860.1.1 No alias PAM68 protein involved in PS-II assembly 0.04 Archaeplastida
Solyc12g096100.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR021855 PAM68-like 47 170
No external refs found!