AMTR_s00016p00115350 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.76

Description : Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0010523 (Archaeplastida) Phylogenetic Tree(s): OG0010523_tree ,
OG_05_0010518 (LandPlants) Phylogenetic Tree(s): OG_05_0010518_tree ,
OG_06_0010125 (SeedPlants) Phylogenetic Tree(s): OG_06_0010125_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00016p00115350
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G31790	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
MA_935792g0010	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	363	391
IPR002885	Pentatricopeptide_repeat	67	89
IPR002885	Pentatricopeptide_repeat	259	307
IPR002885	Pentatricopeptide_repeat	157	205

External Links

No external refs found!