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  5. AMTR_s00016p00143640

AMTR_s00016p00143640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.99

Description : Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica


Gene families : OG0000710 (Archaeplastida) Phylogenetic Tree(s): OG0000710_tree ,
OG_05_0000550 (LandPlants) Phylogenetic Tree(s): OG_05_0000550_tree ,
OG_06_0000466 (SeedPlants) Phylogenetic Tree(s): OG_06_0000466_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00143640
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT5G13250 No alias RING finger protein 0.02 Archaeplastida
MA_104546g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_5126g0010 No alias Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp6g09730.1 No alias Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo438486 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Zm00001e018751_P005 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!