1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo407119

Smo407119


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component


Gene families : OG0002472 (Archaeplastida) Phylogenetic Tree(s): OG0002472_tree ,
OG_05_0001862 (LandPlants) Phylogenetic Tree(s): OG_05_0001862_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo407119
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
AT4G29790 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 Archaeplastida
AT5G22450 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.02 Archaeplastida
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.09 Archaeplastida
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
LOC_Os01g73620.1 No alias component ADA3 of SAGA transcription co-activator complex 0.08 Archaeplastida
LOC_Os05g01690.1 No alias component ADA3 of SAGA transcription co-activator complex 0.03 Archaeplastida
LOC_Os05g28300.1 No alias component ADA3 of SAGA transcription co-activator complex 0.05 Archaeplastida
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.07 Archaeplastida
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.07 Archaeplastida
Pp3c15_5990V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c20_610V3.1 No alias No annotation 0.09 Archaeplastida
Pp3c20_790V3.1 No alias No annotation 0.1 Archaeplastida
Pp3c23_22200V3.1 No alias No annotation 0.04 Archaeplastida
Solyc07g040980.3.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
Solyc11g006960.2.1 No alias component ADA3 of SAGA transcription co-activator complex 0.07 Archaeplastida
Zm00001e018678_P002 No alias component ADA3 of SAGA transcription co-activator complex 0.03 Archaeplastida
Zm00001e027665_P001 No alias component ADA3 of SAGA transcription co-activator complex 0.08 Archaeplastida
Zm00001e029688_P001 No alias component ADA3 of SAGA transcription co-activator complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 871 996
No external refs found!