1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00016p00170610

AMTR_s00016p00170610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.130

Description : External stimuli response.temperature.ICE-CBF cold acclimation transcriptional cascade.ICE1/2 transcription factor


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0001343 (LandPlants) Phylogenetic Tree(s): OG_05_0001343_tree ,
OG_06_0001632 (SeedPlants) Phylogenetic Tree(s): OG_06_0001632_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00170610
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT1G12860 SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01004405001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01008637001 No alias External stimuli response.temperature.ICE-CBF cold... 0.04 Archaeplastida
GSVIVT01013744001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01013745001 No alias Transcription factor bHLH90 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032998001 No alias External stimuli response.temperature.ICE-CBF cold... 0.02 Archaeplastida
Gb_15579 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os02g02820.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os03g04310.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os06g50900.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_10435231g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 Archaeplastida
MA_12807g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.07 Archaeplastida
Pp3c1_20960V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c2_16410V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Pp3c8_18070V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Solyc02g079810.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc02g091690.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc05g005300.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc05g014590.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e010525_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.06 Archaeplastida
Zm00001e025243_P003 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e040732_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 359 401
No external refs found!