AMTR_s00016p00175210 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.133

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor

Gene families : OG0000948 (Archaeplastida) Phylogenetic Tree(s): OG0000948_tree ,
OG_05_0005699 (LandPlants) Phylogenetic Tree(s): OG_05_0005699_tree ,
OG_06_0004574 (SeedPlants) Phylogenetic Tree(s): OG_06_0004574_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00016p00175210
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AT3G07650	COL9	CONSTANS-like 9	0.04	Archaeplastida
AT5G48250	No alias	B-box type zinc finger protein with CCT domain	0.04	Archaeplastida
Solyc05g024010.3.1	No alias	transcription factor (BBX-CO)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	10	51

External Links

No external refs found!