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  5. AMTR_s00016p00181650

AMTR_s00016p00181650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.144

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000387 (SeedPlants) Phylogenetic Tree(s): OG_06_0000387_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00181650
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT2G42410 ZFP11, ATZFP11 zinc finger protein 11 0.05 Archaeplastida
AT3G23130 SUP, FLO10, FON1 C2H2 and C2HC zinc fingers superfamily protein 0.07 Archaeplastida
AT3G23140 URO C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT5G06070 RAB, RBE C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT5G06650 GIS2 C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
GSVIVT01009401001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01028555001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01037897001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
Gb_04808 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_27734 No alias Zinc finger protein 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g04120.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os02g01090.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os08g17640.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_110160g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_424g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_54742g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Mp3g23440.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c20_10790V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
Pp3c23_2190V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_800V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
Pp3c23_861V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_960V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c3_21050V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Solyc05g009380.4.1 No alias Zinc finger protein JAGGED OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc07g006880.1.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc09g011120.1.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc09g061870.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g089590.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc11g011890.2.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e003962_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e010687_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e020926_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e032639_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e040612_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e040940_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030410 nicotianamine synthase activity IEP Neighborhood
BP GO:0030417 nicotianamine metabolic process IEP Neighborhood
BP GO:0030418 nicotianamine biosynthetic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!