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  5. Smo407609

Smo407609


Description : DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana


Gene families : OG0004906 (Archaeplastida) Phylogenetic Tree(s): OG0004906_tree ,
OG_05_0005790 (LandPlants) Phylogenetic Tree(s): OG_05_0005790_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo407609
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.03 Archaeplastida
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida
Pp3c22_850V3.1 No alias MUTS homolog 2 0.03 Archaeplastida
Zm00001e035455_P001 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 418 564
No external refs found!