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  5. AMTR_s00016p00207840

AMTR_s00016p00207840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.178

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0001710 (Archaeplastida) Phylogenetic Tree(s): OG0001710_tree ,
OG_05_0001098 (LandPlants) Phylogenetic Tree(s): OG_05_0001098_tree ,
OG_06_0001138 (SeedPlants) Phylogenetic Tree(s): OG_06_0001138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00207840
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00135250 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.07 Archaeplastida
AT2G01570 RGA, RGA1 GRAS family transcription factor family protein 0.03 Archaeplastida
LOC_Os05g49930.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.02 Archaeplastida
Pp3c19_8310V3.1 No alias GRAS family transcription factor family protein 0.01 Archaeplastida
Smo139506 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.02 Archaeplastida
Solyc10g086380.1.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.04 Archaeplastida
Zm00001e012213_P001 No alias DELLA-type gibberellin signal transducer. transcription... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 18 161
No external refs found!