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  5. Smo410231

Smo410231


Description : RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase


Gene families : OG0005882 (Archaeplastida) Phylogenetic Tree(s): OG0005882_tree ,
OG_05_0006934 (LandPlants) Phylogenetic Tree(s): OG_05_0006934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo410231
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT3G09720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Cpa|evm.model.tig00001071.15 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.02 Archaeplastida
GSVIVT01025641001 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.03 Archaeplastida
LOC_Os07g45360.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.04 Archaeplastida
MA_17443g0020 No alias DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa... 0.02 Archaeplastida
Mp7g07690.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.06 Archaeplastida
Pp3c10_21520V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Solyc09g007440.3.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003951 NAD+ kinase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 99 170
No external refs found!