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  5. AMTR_s00016p00228200

AMTR_s00016p00228200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.216

No description available


Gene families : OG0007754 (Archaeplastida) Phylogenetic Tree(s): OG0007754_tree ,
OG_05_0009365 (LandPlants) Phylogenetic Tree(s): OG_05_0009365_tree ,
OG_06_0011357 (SeedPlants) Phylogenetic Tree(s): OG_06_0011357_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00228200
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Zm00001e019164_P004 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0016149 translation release factor activity, codon specific IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
CC GO:0030915 Smc5-Smc6 complex IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0106068 SUMO ligase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!