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  5. AMTR_s00016p00244030

AMTR_s00016p00244030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.268

No description available


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0042073 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0036547 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00244030
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT3G47180 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01011840001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc01g107940.3.1 No alias E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g005480.4.1 No alias E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis... 0.04 Archaeplastida
Solyc09g007530.3.1 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida
Zm00001e013125_P002 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006855 drug transmembrane transport IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 226 269
No external refs found!