1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00016p00252350

AMTR_s00016p00252350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.305

Description : Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020197 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019330 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00252350
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.01 Archaeplastida
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.01 Archaeplastida
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
AMTR_s00019p00238380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.07 Archaeplastida
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.09 Archaeplastida
AMTR_s00066p00062930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
AMTR_s00095p00039180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g63370,... 0.01 Archaeplastida
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
AMTR_s00103p00113040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65570... 0.02 Archaeplastida
AMTR_s00177p00030580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
AMTR_s00276p00017800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
AT1G16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G74600 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
AT2G46050 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.01 Archaeplastida
LOC_Os09g39970.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.03 Archaeplastida
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.14 Archaeplastida
Smo120613 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
Smo130453 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo444974 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.01 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Smo99677 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Solyc02g069500.1.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
Solyc10g005090.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.08 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 127 174
IPR002885 Pentatricopeptide_repeat 204 228
IPR002885 Pentatricopeptide_repeat 230 256
No external refs found!