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  5. AMTR_s00016p00254630

AMTR_s00016p00254630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.326

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00254630
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00016p00254390 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.08 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00023p00168910 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
GSVIVT01014793001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_20052 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_36108 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 Archaeplastida
Gb_36109 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g38120.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g15500.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os05g15230.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g25030.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g42570.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os11g33394.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os11g33942.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
MA_120599g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_26069g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 Archaeplastida
MA_314857g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_455736g0010 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_6919317g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g041500.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc09g009230.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc10g079520.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 38 419
No external refs found!