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  5. AMTR_s00016p00254860

AMTR_s00016p00254860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.329

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00254860
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00023p00150860 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50190 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_12420 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g21650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g21670.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os08g25030.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os11g34090.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os12g29620.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os12g29650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g078830.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc04g016030.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g006690.3.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc09g009230.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc10g079520.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 35 302
No external refs found!