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Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.368
Description : Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0012883 (Archaeplastida) Phylogenetic Tree(s): OG0012883_tree ,
OG_05_0012816 (LandPlants) Phylogenetic Tree(s): OG_05_0012816_tree ,
OG_06_0012813 (SeedPlants) Phylogenetic Tree(s): OG_06_0012813_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00016p00259690 | |
| Cluster | HCCA: Cluster_52 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_32913 | No alias | Pentatricopeptide repeat-containing protein At3g24000,... | 0.02 | Archaeplastida | |
| MA_935573g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003852 | 2-isopropylmalate synthase activity | IEP | Neighborhood |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Neighborhood |
| BP | GO:0006551 | leucine metabolic process | IEP | Neighborhood |
| BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009098 | leucine biosynthetic process | IEP | Neighborhood |
| BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0009719 | response to endogenous stimulus | IEP | Neighborhood |
| BP | GO:0009725 | response to hormone | IEP | Neighborhood |
| BP | GO:0010033 | response to organic substance | IEP | Neighborhood |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0016597 | amino acid binding | IEP | Neighborhood |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Neighborhood |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
| MF | GO:0031406 | carboxylic acid binding | IEP | Neighborhood |
| BP | GO:0042221 | response to chemical | IEP | Neighborhood |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0043177 | organic acid binding | IEP | Neighborhood |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | IEP | Neighborhood |
| MF | GO:0051287 | NAD binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 414 | 437 |
| IPR002885 | Pentatricopeptide_repeat | 103 | 128 |
| IPR002885 | Pentatricopeptide_repeat | 67 | 97 |
| IPR002885 | Pentatricopeptide_repeat | 5 | 33 |
| IPR002885 | Pentatricopeptide_repeat | 237 | 281 |
| IPR002885 | Pentatricopeptide_repeat | 130 | 178 |
| IPR002885 | Pentatricopeptide_repeat | 338 | 386 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 336 |
| No external refs found! |