Smo415832

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.DSS1/Sem1 component

Gene families : OG0008563 (Archaeplastida) Phylogenetic Tree(s): OG0008563_tree ,
OG_05_0009306 (LandPlants) Phylogenetic Tree(s): OG_05_0009306_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo415832
Cluster	HCCA: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g095093	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	Archaeplastida
Gb_00706	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.02	Archaeplastida
Gb_39668	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.04	Archaeplastida
Mp2g25520.1	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030008	TRAPP complex	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0034998	oligosaccharyltransferase I complex	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007834	DSS1_SEM1	14	70

External Links

No external refs found!