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  4. Sequence
  5. Smo419047

Smo419047


No description available


Gene families : OG0005453 (Archaeplastida) Phylogenetic Tree(s): OG0005453_tree ,
OG_05_0006804 (LandPlants) Phylogenetic Tree(s): OG_05_0006804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo419047
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000144.75 No alias No description available 0.01 Archaeplastida
Cre02.g104650 No alias No description available 0.06 Archaeplastida
Gb_24677 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida
LOC_Os03g58720.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida
LOC_Os03g60930.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.04 Archaeplastida
MA_10436192g0010 No alias No annotation 0.02 Archaeplastida
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.02 Archaeplastida
Pp3c11_7560V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Solyc01g109990.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005929 cilium IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031514 motile cilium IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0071203 WASH complex IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 593 660
No external refs found!