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  5. AMTR_s00017p00197580

AMTR_s00017p00197580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.117

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000798 (Archaeplastida) Phylogenetic Tree(s): OG0000798_tree ,
OG_05_0000584 (LandPlants) Phylogenetic Tree(s): OG_05_0000584_tree ,
OG_06_0001187 (SeedPlants) Phylogenetic Tree(s): OG_06_0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00197580
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT4G27240 No alias zinc finger (C2H2 type) family protein 0.05 Archaeplastida
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01024778001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_25842 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os03g15790.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
LOC_Os04g59380.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_103943g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_17724g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_525155g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp3g21490.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc02g079920.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc07g063970.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!