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  5. AMTR_s00017p00206510

AMTR_s00017p00206510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.126

Description : External stimuli response.temperature.Csd (cold-shock-domain) protein


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0001927 (LandPlants) Phylogenetic Tree(s): OG_05_0001927_tree ,
OG_06_0002403 (SeedPlants) Phylogenetic Tree(s): OG_06_0002403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00206510
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.03 Archaeplastida
Gb_15589 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 Archaeplastida
Pp3c5_6070V3.1 No alias glycine-rich protein 2B 0.02 Archaeplastida
Pp3c5_7880V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c5_7920V3.1 No alias cold shock domain protein 1 0.03 Archaeplastida
Pp3c6_23240V3.1 No alias cold shock domain protein 1 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 8 72
IPR001878 Znf_CCHC 218 234
IPR001878 Znf_CCHC 153 169
No external refs found!