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  4. Sequence
  5. Smo425336

Smo425336


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000521 (LandPlants) Phylogenetic Tree(s): OG_05_0000521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo425336
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AMTR_s00022p00228970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AMTR_s00079p00137860 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AT1G18400 BEE1 BR enhanced expression 1 0.04 Archaeplastida
AT1G25330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT1G59640 BPEp, ZCW32, BPE, BPEub BIG PETAL P 0.02 Archaeplastida
AT2G18300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT2G24260 LRL1 LJRHL1-like 1 0.03 Archaeplastida
AT2G42280 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G58010 LRL3 LJRHL1-like 3 0.07 Archaeplastida
GSVIVT01032055001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Gb_12493 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Gb_36369 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Gb_39758 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
LOC_Os02g47660.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
LOC_Os02g55250.1 No alias transcription factor (bHLH) 0.01 Archaeplastida
LOC_Os06g08500.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os06g41060.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os08g39630.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os09g33580.2 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
LOC_Os11g25560.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
MA_10344244g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_105921g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_158362g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
MA_42080g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_52085g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Mpzg01410.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Pp3c16_7710V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c17_17000V3.1 No alias LJRHL1-like 1 0.02 Archaeplastida
Pp3c21_14114V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c2_2660V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Smo402301 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc04g007300.4.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Solyc12g010170.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g098620.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.07 Archaeplastida
Zm00001e011084_P002 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e022005_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e032950_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e036318_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 147 192
No external refs found!