1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00017p00254260

AMTR_s00017p00254260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.270

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.MET DNA methyltransferase


Gene families : OG0001731 (Archaeplastida) Phylogenetic Tree(s): OG0001731_tree ,
OG_05_0002269 (LandPlants) Phylogenetic Tree(s): OG_05_0002269_tree ,
OG_06_0002277 (SeedPlants) Phylogenetic Tree(s): OG_06_0002277_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00254260
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
AT5G49160 DDM2, MET1,... methyltransferase 1 0.03 Archaeplastida
MA_88843g0010 No alias DNA methyltransferase (MET) 0.02 Archaeplastida
Pp3c11_20540V3.1 No alias DNA (cytosine-5-)-methyltransferase family protein 0.03 Archaeplastida
Solyc11g030600.3.1 No alias DNA methyltransferase (MET) 0.04 Archaeplastida
Zm00001e032960_P001 No alias DNA methyltransferase (MET) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006306 DNA methylation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001025 BAH_dom 939 1077
IPR001025 BAH_dom 767 899
IPR022702 Cytosine_MeTrfase1_RFD 97 232
IPR022702 Cytosine_MeTrfase1_RFD 396 551
IPR001525 C5_MeTfrase 1202 1545
IPR001525 C5_MeTfrase 1119 1166
No external refs found!