1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00018p00087700

AMTR_s00018p00087700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.39

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec12-type guanyl-nucleotide exchange factor (GEF)


Gene families : OG0001652 (Archaeplastida) Phylogenetic Tree(s): OG0001652_tree ,
OG_05_0001619 (LandPlants) Phylogenetic Tree(s): OG_05_0001619_tree ,
OG_06_0006732 (SeedPlants) Phylogenetic Tree(s): OG_06_0006732_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00087700
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034664001 No alias SEC12-like protein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo416271 No alias SEC12-like protein 2 OS=Arabidopsis thaliana 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004779 sulfate adenylyltransferase activity IEP Neighborhood
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0019008 molybdopterin synthase complex IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 316 345
No external refs found!