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  4. Sequence
  5. Smo438324

Smo438324


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL35 component


Gene families : OG0002158 (Archaeplastida) Phylogenetic Tree(s): OG0002158_tree ,
OG_05_0002518 (LandPlants) Phylogenetic Tree(s): OG_05_0002518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo438324
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00034p00044200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AMTR_s00040p00225520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT2G39390 No alias Ribosomal L29 family protein 0.24 Archaeplastida
AT3G09500 No alias Ribosomal L29 family protein 0.31 Archaeplastida
AT3G55170 No alias Ribosomal L29 family protein 0.12 Archaeplastida
AT5G02610 No alias Ribosomal L29 family protein 0.24 Archaeplastida
Cpa|evm.model.tig00000241.79 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
GSVIVT01005972001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
GSVIVT01025050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
LOC_Os02g30050.1 No alias component RPL35 of LSU proteome component 0.06 Archaeplastida
MA_10429159g0020 No alias component RPL35 of LSU proteome component 0.1 Archaeplastida
MA_37003g0010 No alias component RPL35 of LSU proteome component 0.07 Archaeplastida
MA_92240g0010 No alias component RPL35 of LSU proteome component 0.05 Archaeplastida
Mp3g07170.1 No alias component RPL35 of LSU proteome component 0.04 Archaeplastida
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.24 Archaeplastida
Pp3c13_5200V3.1 No alias Ribosomal L29 family protein 0.27 Archaeplastida
Pp3c26_13720V3.1 No alias Ribosomal L29 family protein 0.08 Archaeplastida
Pp3c3_2800V3.1 No alias Ribosomal L29 family protein 0.2 Archaeplastida
Pp3c4_30730V3.1 No alias Ribosomal L29 family protein 0.26 Archaeplastida
Solyc04g010240.3.1 No alias component RPL35 of LSU proteome component 0.23 Archaeplastida
Solyc06g075620.3.1 No alias component RPL35 of LSU proteome component 0.08 Archaeplastida
Zm00001e008428_P002 No alias component RPL35 of LSU proteome component 0.12 Archaeplastida
Zm00001e014607_P001 No alias component RPL35 of LSU proteome component 0.16 Archaeplastida
Zm00001e040695_P003 No alias component RPL35 of LSU proteome component 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 8 63
No external refs found!